Modeling effects of patchiness and biological variability on transport rates within bioturbated sediments

Bioturbation models are typically one-dimensional, with the underlying assumption that tracer gradients are predominantly vertical, and that sediment reworking is laterally homogeneous. These models implicitly assume that bioturbation activity does not vary with horizontal location on the sediment surface. Benthic organisms, however, are often patchily distributed. Moreover, due to natural variability, bioturbation activity varies among individuals within a population, and hence, among bioturbated patches. Here we analyze a 1D model formulation that explicitly includes patchiness, exemplified by conveyor-belt transport. The patchiness is represented with one coefficient αb, as the fraction of bioturbated areas of the total area. First, all the mixed patches are considered to feature the same bioturbation rates. Then variability of these rates among patches is introduced in the model. The model is analyzed through different scenarios to assess the influence of patchiness and biological variability on the resulting tracer profiles (luminophores, 234Th and 210Pb). With patchiness, the principal feature of the resulting profiles is exponential decrease of tracer concentrations near the SWI, due to the accumulation of particles in the nonbioturbated patches, and the presence of subsurface peaks or anomalous concentrations at depth, as the result of particle transport in the bioturbated patches. This pattern is unusual compared to published patterns for conveyor-belt transport. Adding intra-population variability in bioturbation rates induces biodiffusive-like transport, especially with luminophores. This theoretical work provides new insights about the influence of patch structure on particle dispersion within sediments and proposes a new applicable approach to model various bioturbation processes (type and rates of transport) that can be horizontally distributed in sediments

Spring bloom dynamics in a subarctic fjord influenced by tidewater outlet glaciers (Godthåbsfjord, SW Greenland)

In high-latitude fjord ecosystems, the spring bloom accounts for a major part of the annual primary production and thus provides a crucial energy supply to the marine food web. However, the environmental factors that control the timing and intensity of these spring blooms remain uncertain. In 2013, we studied the spring bloom dynamics in Godthåbsfjord, a large fjord system adjacent to the Greenland Ice Sheet. Our surveys revealed that the spring bloom did not initiate in the inner stratified part of the fjord system but only started farther away from tidewater outlet glaciers. A combination of out-fjord winds and coastal inflows drove an upwelling in the inner part of the fjord during spring (April–May), which supplied nutrient-rich water to the surface layer. This surface water was subsequently transported out-fjord, and due to this circulation regime, the biomass accumulation of phytoplankton was displaced away from the glaciers. In late May, the upwelling weakened and the dominant wind direction changed, thus reversing the direction of the surface water transport. Warmer water was now transported toward the inner fjord, and a bloom was observed close to the glacier terminus. Overall, our findings imply that the timing, intensity, and location of the spring blooms in Godthåbsfjord are controlled by a combination of upwelling strength and wind forcing. Together with sea ice cover, the hydrodynamic regime hence plays a crucial role in structuring food web dynamics of the fjord ecosystem

Influence of advective bio-irrigation on carbon and nitrogen cycling in sandy sediments

In sandy sediments, the burrow ventilation activity of benthic macrofauna can generate substantial advective flows within the sediment surrounding their burrows. Here we investigated the effects of such advective bio-irrigation on carbon and nitrogen cycling in sandy sediments. To this end, we combined a range of complementary experimental and modelling approaches in a microcosm study of the lugworm Arenicola marina (Polychaeta: Annelida). Bio-irrigation rates were determined using uranine as a tracer, while benthic fluxes of oxygen (O2), total carbon dioxide (TCO2), dissolved inorganic nitrogen (NH4+, ΣNO2− + NO3−) and dinitrogen (N2) were measured in closed-core incubations containing lugworms acclimatized for a relatively short (2 d) and long (3 wk) duration. The fluxes induced by A. marina were compared to those induced by mechanical mimics that simulate the flow pattern induced by the lugworm. These mechanical mimics proved a useful tool to simulate the effect of lugworm irrigation on sediment biogeochemistry. Subsequently, reactive transport model simulations were performed to check the consistency of the measured fluxes and rates, and to construct closed mass balances for sedimentary nitrogen. This reactive transport model successfully captured the essential features of the nitrogen cycling within the sediment. Advective irrigation by both lugworm and mechanical mimics significantly stimulated the sediments O2 consumption, organic matter mineralization rate (TCO2 release), and denitrification rate (N2 production). While sedimentary O2 consumption was directly correlated to advective input of O2, increasing irrigation rates increased the importance of coupled nitrification-denitrification over the external input of nitrate from the overlying water

Mineral formation induced by cable bacteria performing long-distance electron transport in marine sediments

Cable bacteria are multicellular, filamentous microorganisms that are capable of transporting electrons over centimeter-scale distances. Although recently discovered, these bacteria appear to be widely present in the seafloor, and when active they exert a strong imprint on the local geochemistry. In particular, their electrogenic metabolism induces unusually strong pH excursions in aquatic sediments, which induces considerable mineral dissolution, and subsequent mineral reprecipitation. However, at present, it is unknown whether and how cable bacteria play an active or direct role in the mineral reprecipitation process. To this end we present an explorative study of the formation of sedimentary minerals in and near filamentous cable bacteria using a combined approach of electron microscopy and spectroscopic techniques. Our observations reveal the formation of polyphosphate granules within the cells and two different types of biomineral formation directly associated with multicellular filaments of these cable bacteria: (i) the attachment and incorporation of clay particles in a coating surrounding the bacteria and (ii) encrustation of the cell envelope by iron minerals. These findings suggest a complex interaction between cable bacteria and the surrounding sediment matrix, and a substantial imprint of the electrogenic metabolism on mineral diagenesis and sedimentary biogeochemical cycling. In particular, the encrustation process leaves many open questions for further research. For example, we hypothesize that the complete encrustation of filaments might create a diffusion barrier and negatively impact the metabolism of the cable bacteria.</p

Rheological and Microstructural Changes of Oat and Barley Starches During Heating and Cooling

Microstructural and rheological changes in barley and oat starch dispersions during heating and cooling were studied by light microscopy and dynamic viscoelastic measurements. The two starch pastes showed similar viscoelastic properties after gelatinization, but during cooling the 20% barley starch pastes heated at 95°C underwent a sharp transition in viscoelastic behaviour probably due to the gelation of amylose. This transition was shifted to lower temperatures at 10% starch concentration. Microstructural studies of an 8% barley starch dispersion heated to 90°C using the smear technique showed amylose to form a network structure around the granules. The granules in starch paste heated to 95°C were poorly stained and amylopectin was fragmented. Microscopic examination of an embedded section of the cooled barley starch gel showed amylose to form a continuous phase in which starch granules were dispersed. G\u27 increased below 80°C during cooling of 10% oat starch dispersions preheated at 95 °C. No rheological changes occurred when they were preheated at only 90°C. Microstructural studies of an 8% oat starch dispersion heated to 90°C using the smear technique showed amylose to form a network structure around the granules. Part of the granule structure had already broken down. Heating to 95°C induced considerable changes in the granule structure of oat starch gels. Amylopectin formed a very fine network. Microscopic examination of embedded sections of the cooled, stored gel showed a much coarser structure compared with that of the smear